Is it possible to make multiple sequence alignment for a gp of genes between different organisms in the same time?

Eshraka Ali @Eshraka-Ali

25 March 2023 1 3K Report

i mean that fasta file will contain

>org1

gene1,gene2,gene3,... etc

>org2

gene1,gene2,gene3,... etc

>org..10

gene1,gene2,gene3,... etc

Alexandru Bologa

Hi,

Yes, it is possible. I can't see any problem with this type of analysis, but care should be taken with the gene IDs. You have to keep the fasta format, so I recommend you to edit each sequence header as:

>org1_gene1

acgatcgat

>org1_gene2

cgatcgatc

>org2_gene1

cagtcagt

>etc

With an easy to read fasta file you shouldnt have any problem to multiple align those seqs. ^_^

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