I'm trying to merge two networks (I used DYnet) this gave me the result I wanted. However I want to see the proceses in this network so I want to combine DYnet with BINGO but if I select every node in the DYnet network en start BINGO it will just generate another (BINGO) network without the data from DYnet showed in it. I have attached the ENviz result but offcourse I'm curious about the GO terms related two this overlap.Any suggestions to fix this? If there is another plugin which van inform me about some features about these proteins in the DYnet I would like to hear it.
Thankyou!
Is there any way to export the data to a simple format like *.CSV.?
Our various network software programs import and export data to simple node/link lists as *.CSV files so that you can combine any networks with common nodes/links. Combine them in Excel and export to network visualization/analysis SW.
http://wiki.cytoscape.org/Cytoscape_3/UserManual
http://wiki.cytoscape.org/Cytoscape_3/UserManual/Merge
I think this might give you the result you want using GOlorise to run BiNGO:
1. Install the GOlorize app together with BiNGO.
2. Select the nodes in your DyNet network you'd like to analyse for GO term enrichment.
3. Open GOlorize
4. In GOlorize click "Start BiNGO"
5. Change BiNGO settings and run BiNGO
6. You will now have the enriched GO terms that have appeared in the GOlorize window. Check the ones you want to add to your DyNET network and click "validate". Then go to the "All" tab in GOlorize. Hit "auto colors". Click validate again and you will get little pie charts of your GO terms in your selected DyNET nodes. You can use Cytoscape to change the type and position of these charts.
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