Is it possible to carry out eQTL (expression quantitative trait loci) analysis by comparing tumor and normal samples? If yes, please suggest the tools

04 April 2013 0 5K Report

I have the following data:

- cytogenetics microarray data (cytoscan HD from affymetrix) from 20 patients each having tumor-normal pair, so a total of 40 arrays.

- exon array (Exon 1.0 ST from Affymetrix) data for gene expression analysis each having tumor-normal pair, so a total of 40 arrays).

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