...So how do you explain irreversible physical phenomena and the fact that some transformations are observable while others are not?

If every transformation of time were a pure diffeomorphism, then:

1 Why does the decay of particles follow a precise temporal direction, if time is just an arbitrary coordinate?

2 Why does entropy grow irreversibly, while in diffeomorphisms every transformation should be valid and recoverable?

3 If diffeomorphisms make every choice of coordinates equivalent, why do some space-time transformations not manifest experimentally?

If time had a dynamic physical structure, then these problems would have a natural explanation. If instead time is just a coordinate subject to arbitrary transformations, how can physics maintain coherence with measurable phenomena that seem to violate this arbitrariness?

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