How can I stop water molecules that are generated during a course of an Organic Synthesis to stop interfering and forming further by products. I dont want to use molecular sieves. I want to use green chemistry options..
Depending on the solvent you are using, I have frequently added powdered anhydrous MgSO4 or Na2SO4. That has helped me out with several stubborn imine formations and esterifications.
You can put molecular sieves in the cup of a Soxhlet extractor, and run the solvent reflux through it. This has the advantage that your azeotrope doesn't need to be a two-phase system - it works with ethanol, for example.
Because this method doesn't mechanically abrade the sieves, you can bake them in an oven and re-use them, which is about as green as you can get. If you still don't want to use sieves, any other dehydrating agent that's compatible with the solvent can be used. MgSO4 would be a typical second choice, and like mol. sieves it's re-usable after baking.
Keep in mind that energy is not free, and that a typical vacuum oven is hugely inefficient. On a laboratory scale, mol. sieves are worth recycling, but MgSO4 might best be sent down the drain.
This is only effective if the solvent has a higher boiling point than water (eg toluene). In the case of pentane I don't think Dean Stark would be an option. I'm mentioning pentane because it is particularly effective at partitioning water (more so than toluene) and in the case of the esterification of boronic acids, for example, demonstrates huge advantages over options such as Dean stark or physical desiccants such as mole sieves (eg 2 hour reaction time resulting in quantitative yield of MeBpin relative to the literature procedure which requires >24 hour using diethyl ether and desiccants).
Dear Dr. Karamé, I don't believe Maria Dollar specified that toluene is the solvent being used. Is there a reason you are using exclamation marks? Also both Dean Stark and MgSO4/Na2SO4 have already been suggested; Dr. Demers proposed a particularly promising option.
To stop water molecules generated as a byproduct in an Organic Synthesismaintain the reaction conditions, pure starting material, catalst conc., mole ratio & temperature properly to avoid the formation of the side reaction products. If necesary use protecting groups to prevent unwanted chemical transformations.
To stop water molecules generated as a byproduct in an Organic Synthesis use dehydrating agents like p-toluene sulfonic acid or carry out the reaction in DCC. Otherwise remove water by using azeotrope with benzene using Dean-Stark apparatus.
Say - have you thought of using a Dean-Stark trap? :-)
Seriously, Gabriel's suggestion (pentane) does work, provided that the reactants are sufficiently (even if not entirely) soluble, and that the activation energy of the reaction doesn't make heating necessary. Phase separation, alone, can drive a dehydration reaction to completion, and it could be sufficient to minimize water-induced side reactions as well. (The aqueous phase acts as the "drying agent" for the pentane solution.)
Hexane should work just as well; I think, if you keep it at room temperature. It's worth trying, just for the sheer simplicity of the method.
For sure, Dean-Stark trap is a good option for physically separating water from reaction, alternative to molecular sieves. Another good option is using DCC to chemically remove water, like Madhukar suggested. In this case, the urea should crystallize out of the reaction.
You can use triethyl orthoacetate during your reaction as a water scavenger but I believe it is easy to decompose and produce acetate depending on reaction conditions