Dear Colleagues,
I am required to submit my proteomics MS data into PRIDE. But when I checked my data, I found I only have the peak list (txt) and the search result (html) but no so called RAW data which is directly generated by the machine.
Is it still possible for me to submit them into PRIDE? I do need the PXD number for the manuscript.
Thanks
Hongguang Zha
I suggest you check the guidelines at PRIDE https://www.ebi.ac.uk/pride/help/archive/submission
They have a partial submission and full submission option. Clearly, you cannot do a full submission without the raw MS data. Whether you need to will depend on the journal you wish to publish your work. More are requesting a full submission of the data in PRIDE for publication.
Hi,
For both Full and Partial submission, you need mandatory RAW and MSF file. There is also an mandatory option of linking RAW files with MSF to enable successful PRIDE submission.
If your data is huge, you can upload data through their FTP service which is provided upon request. It can ease your upload process if you have >40GB datasets.
I hope this answer helps you resolve your query.
Accession number is provided within week time via mail to the head of the department (or whoever's email ID you provide during submission) from the time of successful submission.
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