I've successfully uploaded my metadata file and assembled, shotgun metagenomic dataet to my MG-RAST inbox. The metadata passed the QC-like step, my sequwnce data uploaded just fine and I could happily move on to the submission step. Everything works beautifully until I get to the tab where I submit my sequence data, which is there but in red text and I can't select it.
Has anyone else had this issue and knows what the problem is?
I have deleted and re-uploaded both the sequence and metadata files but with no success. Any help/advice would be hugely appreciated!!
Thanks in advance.
Hi Himansu and Qi Yang,
I also got the same problem. Did you solve this issue? If yes, can you please let me know how to fix it?
Thank you!
Svetlana
If anyone have yet not solved the problem of file upload on MG-Rast than please let me know on my email ID [email protected].
I will help you.
The main problem is MG-RAST is punching above its weight. Its servers are overwhelmed.
After uploading, each file undergoes mandatory stat analysis, which depending on file size, takes an eternity.
Until and unless it is completed, it does not allow submission.
I have been waiting for almost 5 days now with a file of 15 GB.
One way to bypass it is by adding your computation resources to MG-RAST. They allow that. Or maybe shift to QIIME. It needs the hands to get messy, but okay, I am getting frustrated with this.
I am thinking of learning R for the long term.
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