I have my metagenome uploaded in MG-Rast. How can I download the data and use "order" (level) in STAMP to run statistical analysis?
Inside the Computer Science and Biology fields.
01 February 2013 9,571 9 View
I want to perform a simple comparison test between 3 genomes, build a Venn diagram to analyze the percentage of common, exclusive and different genes among these 3 genomes.
31 December 2012 4,831 4 View
For example: Genes responsible to nitrogen fixation in Rhizobia, genes responsible for photosynthesis in A. thaliana etc. They are classified as critical genes, right?
31 December 2012 1,138 2 View
I have found it in a bacteria genome during an analysis in slilico. Thanks, Merry Christmas and Happy New Year.
11 December 2012 2,482 4 View
I have 2 genomes fully assembled and annotated. (9Mb. each, aprox.) I want to do a basic analysis to discover difference (%). Nothing so complex, maybe align these 2 genomes and discover the...
10 November 2012 9,923 11 View
If I have a hypothetical protein in my genome sequence (bacterial genome sequence) and I want to do a lab study (not silico analysis) to validate this protein, what are the basics steps to goal?...
10 November 2012 8,223 2 View
I have 3 file types downloaded from MR-Rast. (1) *.FNA, (2)*.TXT, (3)*.RMA. How can I import to STAMP to analyze my data? I know its necessary a Profile and a Metadata archive in STAMP. How can...
10 November 2012 2,591 4 View
What means this "sn" means?
08 September 2012 6,469 9 View
Bar Graph? Pizza Graph? No graph? I have two data tables, but the numbers it's too similar between both, a LITTLE difference occurs in my data. I want to show this for the public. Show can i...
08 September 2012 9,514 5 View
In my genome I always found ABC transporters organized as side by side genes. Is it a pattern for ATP-binding cassette transporters?
07 August 2012 1,646 3 View
Hello experts, Does anyone know any free software about retention index prediction ?
08 August 2024 7,403 2 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
Molecular docking software/ websites?
02 August 2024 8,704 7 View
I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed
30 July 2024 1,061 5 View
I created a file with my outgroup and ingroup species using Beauti, ran it in BEAST, viewed it in Tracer, and then used TreeAnnotator to create a file that I imported into RASP. Could someone...
28 July 2024 2,979 1 View
PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...
28 July 2024 4,762 2 View
Hi all. As a beginner in ChIP-seq experiments, I hope you understand that the following questions might be somewhat basic. I am planning to perform ChIP-seq or MeDIP-seq analysis to investigate...
28 July 2024 6,938 1 View
I am reaching out to seek your valuable advice and recommendations regarding the best software tools to use for this research. Specifically, I am looking for software with a user-friendly...
22 July 2024 3,794 1 View
Hey all, I need help testing for multivariate outliers using STATA for my master thesis. The literature recommends the Minimum Covariance Determinant (MCD) (Verardi & Dehon, 2010). I found the...
22 July 2024 8,821 2 View
Dear Researchers, My question is associated with the "MDCI" method in Orca. Please let me clarify my question using a simple example: Suppose we are going to perform CBS extrapolation using "!...
21 July 2024 1,632 0 View