I'm planning to produce a cheese with the addition of Lactobacillus casei NRRL B-441, and investigate the survival of the strain during the ripening period.
Since there might be other Lactobacillus casei strains (possibly originated from cow's milk and/or the starter culture) besides the Lactobacillus casei NRRL B-441 that I'm going to add, is it possible to quantify the viable cells of Lactobacillus casei NRRL B-441 in a mixed culture by real-time PCR?
Also, would DNA microarray technique for species-specific enumeration of mixed microbial community be enough to distinguish the Lactobacillus casei NRRL B-441 cells from the other Lactobacillus casei strains?