Is there any good online workshop on advanced DEA models?

OR ANY study material with step by step analysis & its interpretation using the software?

01 January 2021 993 1 View

How do I get ConsistencyDupSNP.sh file required for genotype consistency quality control step of genotyping data obtained from GSA 24 v2.0 ?

Genotyping data is from Illumina Global screening array 24 v 2.0 and ConsistencyDupSNP.sh file contains list of pair of duplicated SNPs in GSA24 v 2.0.

18 December 2020 1,966 3 View

Can I get some important resources to analyse Photoluminescence Spectra?

I am trying to figure out what information can I get with the help of PL spectra and how to analyse it? How to do the defect analysis, if I am using two different material for thin film how will...

14 November 2020 2,453 6 View

Hazard value for malaria survival graph??

In an experiment untreated infected mice and infected treated mice observed. I recorded my data in terms of survived mice to 28 days in each group. How to calculate hazard value for treatment vs...

06 November 2020 5,548 1 View

How to analyze nominal/ordinal data in cases where you are testing multiple drugs/ infection against common risk factors?

chi-square or Fisher exact test I have a statistical question about chi-square and/or Fisher exact test. I have a cohort data studying the cause of infection in BRD with variables such as age,...

28 October 2020 2,589 1 View

What tips to follow while renaming a research paper in your repo for easier and quicker retrieval later during Ph.D research?

We often download tons of research paper related to our Ph.D research domain in their default filename format. After few days, recollecting and finding a particular paper becomes difficult. Any...

12 October 2020 2,425 3 View

Why will a very intense peak in XRD even beyond instrument detection limits, will appear in a Sample?

I recently submitted my samples in two different labs, I am getting three very intense peak in between 69-70 (2theta degrees); I want to know what could be the possible reason behind, is it normal...

13 September 2020 2,064 4 View

Need CIF files (XRD) for iron ore sinter phases?

Hi, Can someone share the CIF file (XRD analysis) for SFCA, SFCA I, SFCAII, CF, Ca-Magnetite. Can't find these in COD Thanks, Moni

25 August 2020 7,377 2 View

What kind of data ICPOES Perkin Elmer Optima 5300V ICP-OES provide with?

I recently submitted my samples to a laboratory for ICPOES, I am only provided with Standard Deviation and Mean data of one element out of two. I want to know if there is any spectra that is...

21 August 2020 2,428 2 View

How to check virulence of Fusarium oxysporum TR4?

Please add your suggestions for the following questions: 1. Can anyone suggest me the meaning of "fungus has lost its virulence"? 2. If I am able to observe micro and macroconidia under...

27 July 2020 1,099 1 View

Hello all Can anyone tell me how to use WGCNA?

I'm trying to do WGCNA analysis but i don't know the pipeline? what is the data input format for this software? can anybody help me to fallow correct workflow?

10 November 2018 4,370 1 View

In WGCNA, why do the genes with high connectivity within a module not show up in the GSEA network connectivity plot (reactomePA)?

I have 32 samples (16 +16 of two conditions) of RNASeq data and after differential expression analysis using DESeq2, I used WGCNA to make gene modules. To visualize the networks to which the...

07 August 2018 1,150 2 View

Which tools are used currently for co-expression network analysis?

Gene co-expression network analysis is a systems biology method for describing the correlation patterns among genes across microarray or RNAseq samples. Most of the tools i've found still use...

22 November 2017 5,374 7 View

Which tools are used currently for co-expression network analysis?

Gene co-expression network analysis is a systems biology method for describing the correlation patterns among genes across microarray or RNAseq samples. Most of the tools i've found still use...

10 November 2017 8,012 7 View

How can I combine gene network, metabolic network and PPI network to study drug synergies effect on this combined model?

Disease: Tuberculosis Bacteria: Mycobacterium Tuberculosis Gene Network: obtained by applying WGCNA (R package for weighted correlation network analysis) on gene expression data from GEO...

26 March 2017 1,229 2 View

How can I combine gene network, metabolic network and PPI network to study drug synergies effect on this combined model?

Disease: Tuberculosis Bacteria: Mycobacterium Tuberculosis Gene Network: obtained by applying WGCNA (R package for weighted correlation network analysis) on gene expression data from GEO...

02 March 2017 3,293 2 View

How should I interpret the connectivity measures (kTotal, kWithin, kOut, kDiff) in WGCNA?

07 August 2016 1,171 6 View

How to create a trait file for wgcna analysis. I have normal and disease samples but i dont know how to crete trait file for it?

HOW TO CREATE A TRAIT FILE FOR WGCNA ANALYSIS. I HAVE NORMAL ND DISEASE SAMPLES BUT I DONT KNOW HOW TO CRETE TRAIT FILE FOR IT?

04 May 2016 8,435 0 View

Is there any advantage in removing unassigned ('grey') genes when performing a weighted co-expression analysis (WGCNA), then running analysis again?

I am curious if there is any benefit of removing genes that do not participate, meaningfully, in creating co-expression networks.

01 February 2016 3,455 2 View

CEMiTool needs uncorrected data?

Good day! I'm trying to carry out co-expression analysis using CEMiTool after limma preparation of microarray results. It's pointed in CEMiTool userguide that one should use unprocessed...

01 January 1970 110 3 View