Our experimental data resulted in identification of some novel miRNAs that are not reported before. I want to know the possible targets for these novel miRNAs. Most of the available miRNA target prediction tools rely on known miRNAs and don't offer much for novel miRNAs. Is there any prection tool that may help us to find targets for these miRNAs based on their mature sequences?
Rahat Sharif
I did miRNA sequencing analysis, and the company (Biogene, Beijing) provided me an excel sheet of targeted genes of novel miRNAs. I doubt you can find the targeted genes of novel miRNAs in online server. As you mentioned, majority of the servers relies on known miRNAs.
My suggestion is to research your sequencing data or talk directly with your sequencing company.
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