I have done steered MD of RNA and now trying to figure out the analysis of the data obtained by the simulation.. I wanted to know on how to plot the force vs time plot and force-extension plot from the obtained data.. Can anyone please help..
Thank you soo much Quyen V. Vu for your reply.
Actually I don't have Force-time and distance-time data files, How to get them?
I got it now.. I have pullx.xvg and pullf.xvg files.. I merged their data [distance and force] in one file and then plotted it in Origin..
Now, I have one doubt... how do i know.. which frames should i extract to plot exact force-extension curve..
I am working on a past project in which I recorded the ambient noise in each cardinal direction for a minute but I did not obtain the LEQ sound pressure levels at the time I was recording the...
29 November 2020 8,138 2 View
On the basis of in-silico analysis we hypothesized that a long non-coding (lncRNAs) interacts with miRNA thus inhibiting that miRNA function in bread wheat. Now I want to isolate this lncRNA-miRNA...
12 August 2020 7,643 2 View
Discussions
15 May 2020 6,841 20 View
How can one do slope stability analysis in Plaxis or RS2 for debris slopes, during and after rainfall if the rainfall intensity is known?
21 February 2020 6,074 2 View
Hi, I am modeling a reinforced concrete beam in DIANA FEA. I used steel plates for the supports and loading plates. So how can I define interface property between the concrete and the loading...
18 September 2019 2,052 1 View
15 October 2018 2,757 4 View
Am working on the abrasive waterjet machining of Brass, during the analysis of variances, it was found that when the abrasive grain size was decreased from 60mesh to 80mesh, there was decreasing...
24 July 2018 6,947 9 View
04 October 2017 4,854 25 View
21 June 2017 7,742 13 View
08 June 2017 5,567 6 View
How to calculate the RMSD values for a MD simulation using MOE?
07 August 2021 0 0 View
When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.
16 June 2021 0 0 View
Hi, I want to start testing pitfall trap to obtain ants samples, but I need to conduct molecular analysis on those insects. So, what kind of fluid can I use? Ethanol expires too early and I need...
03 March 2021 5,978 5 View
Hello, I'm fairly new to ARENA and I have the following problem: I have two queues in which, in each queue, a different order type arrives (both having an arrival rate of exponential 10). Order...
02 March 2021 2,431 3 View
Gel electrophoresis, RNA degradation, RNA extraction from fresh tissue
02 March 2021 5,433 5 View
Hello, I have a mechanism where air rises due to convective flows. In this simulation, nothing is driving the air except this. I understand that the Boussinesq approximation only works for small...
02 March 2021 4,910 3 View