I would like to know how one can effectively purify proteins from bacterial culture (with Mol. wt. say, approx. 37 kDa) using Ni-NTA Econo column. Sharing any protocols would be highly appreciated.
This protocol should work well for your 37 kDa protein, assuming it's expressed with a protin tagged with a polyhistidine tag (His-tag), typically consisting of 6 histidine residues.
Materials Needed :
- Ni-NTA Econo column or similar resin (available commercially, e.g., from Bio-Rad, Qiagen, etc.)
- Binding buffer:Typically, 50 mM sodium phosphate, 300 mM NaCl, pH 7.4, with 20-30 mM imidazole (this prevents non-specific binding). - Washing buffer:Same as the binding buffer but with 50-100 mM imidazole. - Elution buffer:Same as the binding buffer but with 250-500 mM imidazole to competitively elute the His-tagged protein. Take imidazole with the highest possible purity this will limit the absorbance to 280nm during the elution gradient. - Cleared bacterial lysate (containing the His-tagged protein).
- Protease inhibitors (optional, to protect protein from degradation).
- Centrifuge (to pellet bacterial cells).
- Buffers for protein analysis (e.g., SDS-PAGE, Bradford for protein quantification).
Harvesting the Bacterial Culture
- Grow the bacterial culture (e.g., E. coli) in appropriate medium (e.g., LB or minimal media) at 37°C with the required inducer (e.g., IPTG) to express the His-tagged protein.
- When the culture reaches the desired optical density (OD600, typically 0.6-0.8), induce protein expression.
- After induction, grow the culture for an additional 2-4 hours (depending on your protein's expression time).
- Pellet the bacteria by centrifugation at 4,000–6,000 x g for 10 minutes at 4°C.
Cell Lysis and Lysate Preparation
- Resuspend the bacterial pellet in a suitable lysis buffer (e.g., 50 mM sodium phosphate, 300 mM NaCl, pH 7.4), adding protease inhibitors if necessary.
- Lyse the cells using a method such as sonication, French press, or chemical lysis. The choice of method depends on the solubility and characteristics of the protein.
- Centrifuge the lysate at 12,000–15,000 x g for 20–30 minutes at 4°C to remove cell debris.
- Collect the supernatant, which contains the soluble His-tagged protein.
Ni-NTA Column Preparation
- Equilibrate the Ni-NTA resin (Econo column or other) with at least 5-10 column volumes (CVs) of binding buffer (e.g., 50 mM sodium phosphate, 300 mM NaCl, pH 7.4).
- If using a gravity flow column, make sure to pre-rinse the column with binding buffer until the flow rate stabilizes.
Protein Binding to the Column
- Load the cleared lysate (preferably filtered through a 0.45 µm filter) onto the Ni-NTA column.
- Allow the lysate to pass through the column by gravity flow or gentle pump flow.
- Let the resin bind the His-tagged protein for 5-10 minutes to ensure maximum binding. You can gently agitate the column if needed.
Washing the Column
Wash the column with 5-10 CV of washing buffer (binding buffer with 50-100 mM imidazole). This helps to remove non-specifically bound proteins.
Monitor the flow-through to check for any contaminating proteins.
Elution of His-tagged Protein
- Elute the His-tagged protein by applying elution buffer (binding buffer with 250-500 mM imidazole).
- Collect fractions (typically in 1-2 mL aliquots), starting from the first elution and continue until the protein is completely eluted.
- You may choose to gradually increase imidazole concentrations for a more refined elution gradient, depending on your protein’s affinity and purity.
Analysis of Eluted Fractions
- Analyze the elution fractions by SDS-PAGE and Coomassie staining or western blotting using an anti-His antibody, if required.
- Determine the fraction with the highest protein concentration (eluted protein).
Protein Concentration and Buffer Exchange (if necessary)
- If needed, concentrate the protein using a centrifugal concentrator (e.g., Amicon Ultra) and exchange it into an appropriate buffer for downstream applications (e.g., storage buffer, enzymatic assays, etc.).
- For buffer exchange, you can use dialysis membrane or desalting columns.
Hello! I used the kit handbook from QIAgen called "The QIAexpressionist". The buffers are important and the washes. It has a protocol for the spin columns which may be more what you need. Have a look at this handbook. If the link doesn't come up just google "QIAexpressionist" Good luck! https://www.qiagen.com/us/resources/resourcedetail?id=79ca2f7d-42fe-4d62-8676-4cfa948c9435&lang=en
First, you need to determine the amount of your target protein. This will help you choose an appropriate purification protocol. Spin columns are a simple and convenient option but are only suitable for small-scale purification. For larger quantities, you can connect your columns to an ÄKTA or Bio-Rad purification system to scale up production efficiently.