How much do you know about the structure of the protein?

Protein structure is available for bacterial aspartate kinase while no definite structure is available for my plant gene

Perform a homology modeling for your plant protein using bacterial aspartate kinase as a template, if both share reasonable a sequence identity. There are online servers (swiss-model) for this purpose.

Dear Dr.

Firstly i thank your response. Unfortunately, Plant and bacterial APK structural models do not share significant sequence similarity.

if that case, there are threading based algorithms available for the 3D structure prediction.

Like phyre and ITasser servers. hope this will help you.

use raptor X, it needs only your protein sequence and predicts binding sites.

Thanks alot America Chi and Dr. Thamotharan.

Thanks for the response Dr Suresh Kumar.