I have the genetic and protein sequence of a DNA endonuclease which is not in the database (e.g. NEB).
I would like to search for its DNA recognition site. Is there a bioinformatic solution? How can I proceed ?
Thanks for your help.
pl read the valuable article ' Massively parallel characterization of restriction endonucleases'
Article Massively parallel characterization of restriction endonucleases
Please have a look to following articles,
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1178009/
http://science.sibenzyme.com/papers/newenzymes/enzyme-pspxi
https://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-534
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-10-286
Regards......
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