I want to do multi-chain modeling by using more than one template at one time. How should I do this? Do I need to change model_multiple python script or to change model_multichain script?
Rajnikant Namdeo
Just use that Alignment file in right way. No need to change in automodel class python script.
Alignment will be like....
>P1;
target delimiters
Seq of Chain A
/
seq of chain B *
>P1;
1st template delimiters
Seq of 1st template with proper alignment*
>P1;
2nd template delimiters
Seq of 2nd template with alignment in first*
Under your python script simply define PDB codes with '" , "
Thats all.
You can also refer https://www.researchgate.net/post/How_to_model_Homodimers.
Wishes.
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