How to determine n terminus and c terminus in molecular dynamics by gromacs?

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Jamoliddin Razzokov

You can define it using VMD?!

Ibrahim A Osman

ok thanks but can you tell me please how can by VMD or PYMOL

So, install VMD to your PC. The file has to be in .gro or .pdb format. On the next step you should type command in terminal, for example: vmd protein.pdb. Visualizing you can find n and c terminus.