I want to know n terminus and c terminus for protein but according to molecular dynamics simulations by gromacs especially in (RMSF).
You can define it using VMD?!
ok thanks but can you tell me please how can by VMD or PYMOL
So, install VMD to your PC. The file has to be in .gro or .pdb format. On the next step you should type command in terminal, for example: vmd protein.pdb. Visualizing you can find n and c terminus.
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