Hi there,

I am working with Treemix using thousands of SNPs to visualize the relationships between populations of my species of interest.

The manual is quite simple and although I can technically create the trees with different numbers of migration events, how do I decide which one is the right one?

I've read something about looking at the log likelihood values but I don't know how to do this (in R?).

Any help would be much appreciated.

Thanks!