How to calculate number of CpG fragments in specific coordinates of a reference genome?

18 May 2023 1 9K Report

Is there a ready to use solution?

Hi Alexander

I guess you're talking about CpG islands.

if so, go to the UCSC database (https://genome.ucsc.edu) and with the right genome in the genome browser and at the right positions, use the CpG optional track to see the results on your sequence.

all the best

fred

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