How to calculate Linkage disequilbirium coefficient using gene frequencies?

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Sandeep Kumar Dhanda

Thanks Safa, the paper is useful in understanding the background of these equations.

Ayoob Obaid Alfalahi

Dear Sandeep...

Check this link below, its helpful:

http://pbgworks.org/sites/pbgworks.org/files/measuresoflinkagedisequilibrium-111119214123-phpapp01_0.pdf

Best Luck

Thanks Ayoob. this is very informative.

You welcome sir.

Regards.

Kumardeep Chaudhary

This may be useful

https://github.com/bvilhjal/ldpred