I have around 15,000 protein sequences which are product of newly re-annotated genome. The sequences looks like
>PRT1T1
MNNEPELELLEE........
>PRT1T2
MMMIIELPTTTTWEEEW........
>PRT2T2
MKKKPAVAVLKLKPLTR..
I want to assign "name" to all these proteins. Simple blast search will lead to mus-annotation. Please suggest some reliable tools/software.