I was following the tutorial/methods. I realized that the pipeline was applied on single-end sequencing data. I wonder if anyone has done it on paired-end data especially on the step of converted fastq to tab-delimited sequence file required by the pipeline?
Daan Noordermeer
Hi Wilson,
Do you have a special reason why you want to keep the paired-end information (e.g because you want to see for possible three-way contacts, or want to reduce the number of unmapped reads)?
If not, using the reads from one single ends (so one of the two .fastq files you obtained) should work.
Daan
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