Once I have the ONIOM optimization, I have done a single point calculation with all the system in DFT, then I have to found zero-point energy but I don't know how
If you want to use the zero-point energy you must run a frequency job at same level of calculus. In this case, from the result obtained in DFT single point, you can do it. Practically at final of the output you will find all thermodynamic results, with Ezpe, enthalpy, etc...
I checked from the single point output file and nothing related to the thermodynamic results appears, I also run the frequency calculation but this error occur:
I've never had this error. Maybe could come from the opt structure. In fact, the method in the optimized structure and frequency are different. Which kind of Oniom did you use? QM/MM or QM/QM ? How many atom has the molecule?
I have made calculus to test opt+freq with onion MQ/MM successfully. I made that because I think that the calculation of frequency with the oniom optimized structure won't be representative. Structure optimization and frequency should be at same level. For this reason I suggest you to run the freq job with ONIOM. Even so, I am not specialized with Oniom and I don't know if the simplifications can imply theoretical problems. Also I think is a good start to investigate freq calculation with Oniom and its problems.
I have attached the results of my test. The results are practically at final in output. For fast search use the word " Thermochemistry " in document.
As Joaquim suggested, you shoud do frequency calculations.
"LenV= 6739158 MaxCom= -201" means that you run out of disk space and/or memory to run this job. Frequency calculations require a lot of memory (I mean A LOT).