You should locate the file you want to use, in the same folder as the FLAC project file. Otherwise, the file may be called by specifying its complete path (e.g., g:\myfolder\gilroy1.acc)
As Hossein explained, you should place the input motion file in the same folder with the project file. By the way, you should use proper command to employ the motion. For example:
table 1 read ImperialValley.txt
apply xacc 0.01 hist table 1 range z 0.0
Also, in the first line of your input motion file you should define number of data and a coefficient like: