Dear all,
I have a list of accession numbers of proteins and I want transform this one in a taxonomic list. How can I do this on NCBI or other platform?
Dear,
Using sparql bash and curl you can do it programmatically.
Example you have this script https://paste.fedoraproject.org/456173/ named accesionTotaxon.sh.
from command line:
$ ./accesionToTaxon.sh Q7UPS1 P08646
protein,name
http://purl.uniprot.org/uniprot/Q7UPS1,"Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1)"
http://purl.uniprot.org/uniprot/P08646,"Drosophila melanogaster"
This generate a csv results output with ',' as delimiter
I hope that will help you
Dear Jonathan,
I will try this method, thank you.
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