Genome-wide Prediction of promoter is a difficult task as they are not conserved and presence of multiple promoters and presence of promoters in the introns complecate this task. Actually we scanned the entire rice genome for promoters using Softberry promoter prediction tool and used those promoters which lie upstream to the genes for the work. It may be easy to predict promoters if you can extract 3000 nucleotides upstream regions of all protein coding genes.

@Kandasamy Ulaganathan

But softberry can't be use for wheat, it's already have promoter sequences of some organisms.

Thank YOU

Dear Shah

You can use TSSP tool of Softberry for promoter prediction in any plant genome

Sincerely

K.ULAGANATHAN

Respected Ulaganathan

I tried that one but it can't analyze large sequence and you know predicting promoter one by one is impossible.

Thanks