How I can learn molecular dynamics using NAMD?

More Mokhtar Nosrati's questions See All

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Can graphene layers be coated by CVD on hydroxyapatite powders?

Is the hydroxyapatite decomposed during the CVD process?

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What do you suggest to me like books, articles to start working with isogeometric analysis?

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How to ensure that a chemical synthesized peptide has correct sequence?

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MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

fatal error

16 June 2021 0 0 View

What kind of fluid could I use for a pitfall trap that also does not invalidate molecular testing?

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Why are the velocities so high in my Boussinesq approximation Fluent simulation?

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How to repeat an operation on an atom selection for multiple times in PyMol?

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What is the characteristic length to determine the Reynolds number for the scattered turbulent fluid flow?

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Florent Hédin

Did you had a look at this one :

http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-win-html/namd-tutorial-win.html

I have never used NAMD on windows but this tutorial seems to cover most of the things one can do.

Ramin Ekhteiari Salmas

I highly recommend you to learn how to use Linux-based systems if you are interested in molecular modeling approaches.

I agree it will definitely make your life much more easier, especially when you will have to analyze the results because I don't think that all the processing scripts/packages will be available on windows