How I can find flow cell and kit or model file in guppy for NGS analysis?

13 February 2023 1 2K Report

Hello every body. I need HELP. PLEASE

in basecalling fast5 files, using genomicpariscentre/guppy image in docker, I try many flowcell and kit names which are available in guppy(I print them using this code: guppy_basecaller --print_workflows) but I recieve this error: could not find matching workflow for flowcell XXX and kit XXX.

What can I do to fix it?

Abhijeet Singh

You must be knowing the flowcell and kit used to generate the sequence data/fast5 files. Printing workflow would not help much if you dont know what specifics were practically used.

You might some help from here

https://github.com/nanoporetech/rerio

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