I am working on interactions of bcl2 with its family. I have selected 4 online servers Zdock, Cluspro, Patchdock, Grammx. While patchdock provided the results along with statistics(scores, area and energy), the other methods just returned the best models(pdbs). How do I compare the results and select the most probable stucture?
TIA!
Martin Klvana
Different protein-protein docking methods use different algorithms to score the protein-protein interactions. But once you get PDB files from different methods, you can evaluate them all using various protein-protein interaction/interface analysis tools . . .
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Vamsi Krishna Thiriveedhi
Dr. Jody D Berry, there is no crystal structure of Bcl2 and EGLN3 complex on pdb.
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