I am working on immune reaction in Alzheimer's disease in mouse models at UCL. Currently I am doing co-immunostaining with antibodies against Iba1 (green) and CD68 (red).

My question is:

How to evaluate whether the microglia cell is activated or not? The signal varies quite highly, and can be either punctuate or globular, either in the cell body or in the processes or both.

As it is a phagocytocic marker I am aware that there is variation. However I am unsure of where to draw a line between unactivated to activated.

Thank you for advice!

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