The vice has two flat and parallel jaws, and the force F of the vice upon each side of this sphere does NOT compress the sphere beyond its elastic limit.
From your description, I understand that you're stressing is within the elastic limit of the sample. The reduction in height can then be calculated for your spherical sample according to Hertzian mechanics. Do consider - http://www.sciencedirect.com/science/article/pii/S0009250914001651 which illustrates this methodology in sec. 2.