I am working on genotypes of tomato and to find polymorphism i have used RAPD primers. how can i find PIC, IB, resolving power( RP), Marker index (MI), SI-similarity index,effective multiplex ratio (EMR), Shanon diversity index (H).
Thank you Vivek Vaishnav for your answer. i will be very thankful if you will elaborate me in attached data file and will check PIC i have calculated manually. Moreover can you refer any book/ Literature from where i can understood that what these terms actually are.
Dear Nafisa
Please see the attached file and following link.
https://www.analyticsvidhya.com/blog/2015/11/excel-tips-tricks-data-analysis/
You can try DeMoMa. It is not a complicated program and does not require any installation. It is a very simple calculation tool prepared on Microsofot Office excell sheet. After scoring for each marker, you just need to know the number of bands for that marker, how many of these bands are polymorphic and how many times your gene pool uses a score of "1".@
https://avesis.erciyes.edu.tr/fatihhanci/dokumanlar
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