Slow breathing, usually at frequency of 0.1 Hz, is a method of relaxation and supposed to increase parasympathetic activity. Heart rate variability is used as a marker for autonomic response to such intervention. In the frequency domain of HRV analysis, the HF power is considered as a marker of vagal modulation of cardiac activity, the LF power for sympathetic influence with parasympathetic component, and LF:HF ratio as sympatho-vagal balance, though with controversy.
There is a concern about how to interpret frequency domain of the HRV analysis if respiration frequency is variable (not controlled). For example, as showed in the attached file, while time domain analysis of HRV indicates increased vagal activity in response to slow breathing (increase in SDNN, RMSSD, NN50, and pNN50), the frequency domain is complex; LF (and LFnu) and the LF:HF ratio are higher in slow breathing compared with normal breathing and also compared with breathing at frequency of 0.2 Hz. Also, HF is not significantly different between slow breathing and breathing with frequency of 0.2 Hz while HFnu is lower in slow breathing.
How frequency domain of HRV must be interpreted when the intervention itself is changing the frequency of respiration? Is the time domain a better analysis of autonomic response in such case?