How can I generate a heatmap using the docked file data I have collected? .

Kishna Vijayaraghavan @Kishna_Vijayaraghavan

03 March 2014 0 10K Report

Which server can use for heatmap generation? I have the docked file data (3 PDB files).

Badges
Science topic

More Kishna Vijayaraghavan's questions See All

How can we do a Reverse Technology Process?

Target identification -> HTVS -> Glide XP -> e-pharmacophore mapping?

03 April 2014 5,309 0 View

How can I interpret HEX server protein-protein docking results?

I've got two files, *.hex and *.pdb files. I want to see the interactions between those two proteins. How can I see it?

03 April 2014 10,167 2 View

How can I predict the IC50 value for a ligand with the help of an occupancy value?

I have the occupancy value (Binding area value of my protein docked with my ligands). Can I predict the IC 50 value?

03 April 2014 2,989 3 View

Does anyone know how PPAR-Gamma is related to Type II Diabetes?

see above

03 April 2014 456 3 View

Can anyone tell me what K-mean clustering means?

In what bases does K-mean clustering separate data?

02 March 2014 7,575 6 View

Is there any software or online server to do cluster analysis ?

Cluster Software programs: I have a set of compounds ( say 10000 ); I want to cluster them or group them into certain properties( say structures). How can I group them? Is there any software or...

01 February 2014 2,166 3 View

Can I use e-Pharmacophore on any web server?

see above

01 February 2014 4,465 1 View

Can anybody provide a small paragraph about e-pharmacophore?

e-pharmacophore explanation.

01 February 2014 8,021 1 View

Does anyone know how to view the alignment results in ESPript?

I have given the clustalw (*.aln file) as input and given the submit button,but it doesn't shows any alignment result or images? How to view the output files?

01 February 2014 9,870 3 View

How to fix errors in my heat transfer steel structure with reinforced concrete slab model Abaqus?

I have modelled a steel structure using beam elements in Abaqus and attached to this structure reinforced concrete slab. The analysis that I am making is heat transfer of the structure. The...

07 August 2024 1,028 0 View

Why does my protein refolded to beta sheet during thermal denaturation analysis?

Hi! So i attempted to understand a novel protein behavior towards heat application by analyzing its secondary structure change. I subjected the protein to a thermal denaturation analysis using...

06 August 2024 1,989 3 View

How to heat polymer for about 130° without oil bath ?

is there any other way to heat a polymer evenly other than oil bath if so what are those and how to use it

06 August 2024 947 1 View

Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...

05 August 2024 6,787 4 View

How to Add Missing Water Molecules in Protein-Membrane Simulations?

I have protein-membrane simulations (PDB, PSF, DCD) and have noticed that water molecules near the protein are not visible in the simulations. How can I fix this issue? Is there a way to place the...

04 August 2024 1,200 2 View

What should I do with parameters that are not relate to my simulation in MyLake model?

I want to Estimate surface heat fluxes using MyLake, but I don't have all the initial values in model parameters section and other sections,is there a way?

04 August 2024 1,537 1 View

Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

Seeking Software Recommendations for SELEX NGS Data Analysis?

I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed

30 July 2024 1,061 5 View

What are the perfect mathematical model for a solar-powered ship implementation?

A computational study of heat flux on cylindrical surfaces using CNT hybrid nanofluids

28 July 2024 4,985 1 View

Could you try using PeptiCloud and see if it's a useful tool for biology research?

PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...

28 July 2024 4,762 2 View