If you are just wanting to see if it is present or not in the genomic DNA, you can just perform a standard PCR in a regular thermocycler, and run the products out on an agarose gel. This will not be quantitative unless you load varying amounts of template into the reactions, have a loading control gene, and stop the reaction after various amounts of PCR cycles (so as not to reach the threshold where everything has reached a maximum).

As far as the SSR marker, it depends on if you are concerned about how many copies there are in the genome. If so, you need to do quantification (best way is by quantitative real-time PCR), if not perform just normal PCR.

Run on gel and obtain low intensity bands. Keep one thing in mind that, the intensity of all the bands should be same and standardize the concentration of DNA such that, you get low intensity bands.