I'm using the following protocol (https://www.ncbi.nlm.nih.gov/pubmed/25193639) to precipitate proteins from sperm nucleus:
- 500 ul of the sample + 125 ul of 100% TCA (final concentration 20%)
Incubation on ice/30 minutes
Centrifugation (16,000G/5 min)
After that I remove the supernatant and wash the protein pellet 2X with acetone (16,000G/5 min) and remove it.
The problem: It is impossible to dissolve the pellet after the acetone washes. I have already tried Laemmili buffer (60 mM Tris-HCl, 2.2% SDS, 5% glycerol and 0.1M DTT) because I need this sample for western blotting (it do not dissolve but I could identify protamine in the gel), and now I need digest this sample with trypsin for mass spectometry.
I have already read many questions in the Research Gate about the use of acetone for protein precipitation, and its capacity to make the proteins unsoluble. I'm really considering remove this step from the protocol.
Does anyone have a suggestion how to dissolve the protein?