A novel gene X that plays an important role in patterning the embryonic axis in a model animal system of interest has been identified. How can an experiment be devised to test if the mRNA of gene X undergoes localized translation?
first you need to define meaning of localized translation, where do you want to see in a cell line which do not express this mRNA or in whole animal. Further you have to know where is it expressed in an organelles, cytoplasm and or nucleus.
1. I will do insitu hybridization can detect where the RNA is made in tissue sections.
2. To determine the protein expression I will do the following, isolate cytoplasm and nuclear extract to detect in these two compartments.
3. If it is cytoplasmic, I will use few cell organelle markers to immunolocalize with the the antibody against the protein you are interested.
4. I would also fractionate the protein using dicontinuous sucrose gradient to check the density sedimentation patterns and use organelle specific markers to identify.
5. Finally I would like to silence this RNA in a mammalian cell line and corroborate the above all experiments by repeating those experiments.