We are using ethanol permeabelized cells with LM609-FITC by FACS but the IgG remains negative. Any suggestions? Can it be endogenous integrin pool although the cells are considered avb3 negative?
May be I misunderstood your question, but so far as I know parental Hek293 are avb3 integrin negative due to a very low (or even absence of) b3 and b5 subunit expression.
I also see a low avb3 expression on 293 cell surface. But after permeabilization I see intracellular expression with the specific antibody, but not with my IgG...