I like the idea of ProteomeXchange, which is a public archive for sharing mass spectrometry-based proteomics data. However, the current tool for preparing a submission of Trans-Proteomic Pipeline-processed material, "idconvert", does not seem to be functional (see discussion thread linked below). I currently perform searches using the version of X! Tandem that is bundled with the Trans-Proteomic Pipeline. Am I missing something? Are there other ways to construct conforming files for upload?

https://groups.google.com/forum/#!topic/spctools-discuss/NqJEjWJju4Y

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