I'm extracting Mtb genomic DNA for whole genome sequencing. I've read some articles which suggest the use of RNase A solution to get rid of RNA. One thing which isn't clear is at which stage of extraction should RNase be added. Anybody with an idea
Larsen et al. suggest adding it after dissolving the washed and dried DNA pellet in TE:
http://www.ncbi.nlm.nih.gov/pubmed/18770603
Alternatively, I think adding it after the proteinase K digestion, before adding the NaCl would be a good place to do it if you wanted to avoid protein in your final sample. If you do it there I would let the samples cool to room temperature, add the RNase, and incubate for a few minutes at room temperature.