Does anyone know how I can get small RNA seq from GEO Database? Thanks

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Daniel Amsel

Hi,

I would search literature that treats the desired dataset and has uploaded the files to GEO.

You need to install the sra-toolkit, if you did not do that already : https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software

Then copy the SRA number from the GEO page of the article, e.g. SRR04048

and try : fastq-dump SRR04048 (in the linux bash for example)

You should get the fastq file from the SRR04048 archive, but it may take some time.

Hope this helps.

Farid Zia

Hi Daniel