I have a data set with a response variable with three outcomes (e.g. "zero", "one" or "two"). I want to see if this changes with the explanatory variable 'time'. Since the data is repeated measurements I will use a mixed-effect model with ID as random term. I was considering use glmer from 'lme4' package in R, and model separate binary logistic regression models with only two outcomes (model1: "Zero" vs "One" and model2: "Zero" vs "Two"). I know there is other software and Bayasian tools for multinomial logistic regression (with random effect), but I will prefer glmer from 'lme4' package due to parameterization and interpreting of the analyses. 

So I kindly ask for the following:

1. I would like to get suggestions of references (articles and books) on this procedure of using separate binary logistic regression models for ordinal data.

2. Further, I would also like to get your opinion pros/cons of using sets of binomial vs. multinomial logistic regression. 

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