I would like to know the working of NIPTmer. what does "A.2. Creating blacklist of known polymorphisms" do? which are the vcf files to be supplied?

I've a set of BAM files. I'm able to do the first step:

A. Creating reference kmer lists A.1. Creating chromosome (or sub-chromosomal region) specific lists

Please help me.

Thanks with regards.

Greeshma Thulasi

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