My intention is to plate the cells in 24 well plates followed by transfection. Although the flasks are 100% confluent, the cell count per square that I'm getting using the hemocytometer is not matching to the exact cell density of the flask before trypsinization.

Usually, I collect cells in 2ml of L-15 medium suspension after trypsin treatment. Then I prepare 20 ul of loading suspension (10 ul of cells and 10 ul of trypan blue dye). To load the cells into the hemocytometer I use 10 ul from the loading suspension. But when I count the cells using a hemocytometer hardly I'm getting less than 30 cells per square. I'm experiencing this issue only in the cell line that I developed. To cross-check this I have used another 100% confluent cell line (EPC) for counting where I'm getting more than 200 cells per square.

Could someone assist me with this? Thanks in advance.

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