Clonality can be tested only by single cells cloning, if you have problem to culture your cells as single cells you can label them and then culture them in single cell density together with other non-labeled supportive cells and to show that your single cell create a a fully labeled clone
If I want to confirm the clonality of stem cells and its daughter cells,I have to prove the daughter cells are originated from a single cell and the genetic content is same in the daughter cells or both?should I consider the extra chromosomal inheritance also?