Hi RG community,
Does anyone know of a cell signaling database that can provide gene ontology definitions for any protein that you submit. Basically, something that can list all the pathways that the protein of interest might be involved in?
Thanks in advance,
Tapan.
The choice of database depends on your requirement. As in this case you can probably refer to the Panther Database: http://www.pantherdb.org
However, to have a composite detailing of all the pathways in which your protein of interest is involved, some amount of literature search is recommended too, coz databases might miss a few of the recent updates.
Dear Tapan Sharma,
I agree with @Rupa Bhowmick
These are other tools you can use to make GO enrichment as:
http://amp.pharm.mssm.edu/Enrichr/
https://david.ncifcrf.gov/
http://www.funrich.org/download
Best regards,
Leite
Phosphosite is incredibly complete and well-curated based on published literature: https://www.phosphosite.org/
It will tell you all of the phosphorylation sites on your protein and lists the kinases and the biological process affected. You can also search for substrates of kinases.
- Badges
- Science topic
- Similar topics
- Geoscience
- Asia
- India