Good day, recently I saw some journal that calculated the SASA value (y-axis) against the number of residue (x-axis) in the simulation analysis by using YASARA. So far, I only know how to get SASA value of the whole protein per time. The reason why I am checking this is because I would like to understand if the SASA of each residues has something to do with their lipase activity as I was also comparing them with biochemical experiments . Does anyone has any experience regarding this? Thanks in advance.
# Example: Plot the solvent accessible surface area and the electrostatic surface potential of the residues Thr 1, Ser 11 and Arg 17
http://www.yasara.org/md_analyze.mcr
Vishal K Sahu Thanks for the answer, I probably have to get another software to do the job since YASARA seems to only identify SASA for certain residue.
Martin Klvana Thanks for the answer, I just found out on the macros and it seems to only identify few stated residue instead of the SASA of all residue. Probably I have to get another software to get the job done.
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