Can someone give me some suggestions of how to enter the phenotype data into Arlequin v3.5.1.2 for the AMOVA analysis?

22 September 2014 1 5K Report

For example, if I have excessive activity of a protein, normal activity and null activity, should I code them as 2, 1 and 0 then enter them as an allele frequency data for each population?

Subhash Chandra

See if this helps

https://www.eeb.ucla.edu/Faculty/Barber/Web%20Protocols/Arlequin.pdf

Check the manual also

http://cmpg.unibe.ch/software/arlequin35/man/Arlequin35.pdf

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