Nawar Dalila

2 Questions 7 Answers 0 Followers

Questions related from Nawar Dalila

Is there any OVERALL score for the dbNSFP results?

I have a list of almost 1500 variants. I ran the search for the functional prediction using dbNSFP database. I got the results output file with the known 412 prediction columns. I wonder if there...

15 February 2016 6,674 0 View

How can one extract the info data from .VCF file and merge it with the genotypes using R or any other tool?

I have a huge VCF file with several GBs size. I can extract the genotypes for the required SNPs in a defined region using the VariantAnnotation package in R like this: rngs

09 November 2015 7,284 2 View