Nawar Dalila

5 Questions 8 Answers 0 Followers

Questions related from Nawar Dalila

How can I make those graphs in STATA 14?

I am trying to generate two figures in STATA 14 and I will appreciate any help with that: First is to make the distribution for a continuous variable as in the first graph and color some...

09 May 2017 6,967 0 View

Is there any OVERALL score for the dbNSFP results?

I have a list of almost 1500 variants. I ran the search for the functional prediction using dbNSFP database. I got the results output file with the known 412 prediction columns. I wonder if there...

15 February 2016 6,710 0 View

How can one extract the info data from .VCF file and merge it with the genotypes using R or any other tool?

I have a huge VCF file with several GBs size. I can extract the genotypes for the required SNPs in a defined region using the VariantAnnotation package in R like this: rngs

09 November 2015 7,348 2 View

Is there anyway to calculate the hardy-weinberg equilibrium for each polymorphic site using the DnaSP software?

I have entered the data as phased file format.

17 February 2015 2,247 5 View

Can someone give me some suggestions of how to enter the phenotype data into Arlequin v3.5.1.2 for the AMOVA analysis?

For example, if I have excessive activity of a protein, normal activity and null activity, should I code them as 2, 1 and 0 then enter them as an allele frequency data for each population?

22 September 2014 4,642 1 View