Can some please suggest which program to use for energy minimization for batch of proteins?

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Arjun Ray

Hi,

You can use GROMACS for energy minimization and just script it to run for the batch.

http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/05_EM.html

Cheers

Jose Ednésio da Cruz Freire

See the Chiron server: Rapid Protein Energy Minimization Server http://troll.med.unc.edu/chiron/login.php

Chi Wen Lee

1. Gromacs is popular

2. FoldX is rapid